cBioPortal for Cancer Genomics
Aid discovery in complex cancer genomics data
- 42
- Projects
- 8
- Years accepted
- 5
- In 2026
Projects by year
422026
5 acceptedShow
Automated Clinical Metadata Harmonization Dashboard
Accepted project · by Ahmed_Osama
cBioPortal hosts 400+ cancer genomics studies whose clinical metadata is wildly heterogeneous — treatment fields alone have 24+ variants. The...
AI-Assisted Curation Assistant Tool for cBioPortal
Accepted project · by fppcng
This project aims to extend the existing cBioAbstractor prototype into a schema-driven formatting pipeline that assists curators in transforming...
Enhance Similarity Maps (Embeddings) Visualization
Accepted project · by Leslie Ejeh
cBioPortal introduced Similarity Maps, a feature that visualizes UMAP/PCA embeddings of cancer samples, allowing researchers to discover hidden...
MCP Apps: Interactive Genomic Visualisations for AI Clients
Accepted project · by Luke Devlin
This proposal outlines a plan to extend the cBioPortal MCP server with interactive genomic visualisation applications via MCP Apps that allow AI...
Enhance 3D Protein Structure Viewer in cBioPortal using AlphaFold Data
Accepted project · by YichuanZ
This project enhances the 3D protein structure viewer in cBioPortal by integrating AlphaFold predicted structures alongside experimentally determined...
2025
3 acceptedShow
This project aims to automate metadata harmonization for cBioPortal, a widely used platform for cancer genomics research. Currently, metadata from...
Show Variant Allele Frequency on the Plots Tab and OncoPrint
Accepted project · by Rishi Prasad Sulakhe
This project aims to enhance cBioportal's analytical capabilities by integrating Variant Allele Frequency (VAF) visualization into the Plots Tab and...
AI/LLM Generated gene alteration and expression based subtyping for each tumor type
Accepted project · by Suhasini Lulla
The project aims to enhance the cBioPortal platform by generating a list of recommended default genes for each OncoTree code, which are often used...
2024
9 acceptedShow
- Add the ability to spawn code notebooks from cBioPortal queriesgautamsarawagi
- Integration of AlphaMissense Pathogenicity Predictions into Genome Nexus and cBioPortalIvy Zou
- Automated Curation and Harmonization of cBioPortal Clinical Metadata using Sentence TransformersAbhilash Dhal
- Chatbot trained on documentation site and conversationsXinling Wang
- Create pipeline/interface to prioritize variants for OncoKB curationYameng Ge
- Improve navigatability of the HTAN data standardsAnkita Sahu
- Extend Chart Types in Study Viewmukayevolzhas
- Frontend visualization and incorporation of single cell data in cBioPortalSURAJ SHARMA
- Visualize OncoKB annotation and patient report generationAishika Nandi
2023
6 acceptedShow
- Add Mutation Diagram on Study View for Enhanced Mutation AnalysisAditya Garg
- Proposal_Interactive web tour_Biqing SuBiqing Su
- Pathway Improvements in cBioPortalGorkem
- Group Comparison - Generic Assay Categorical and Binary data implementationJiahangLi
- Automating Quality Control of Datahub SubmissionsJustin Jao
- Create a clinical trial curation tool based on CTML from MatchMinerJustin Singh
2022
2 acceptedShow
- Improve Genome Nexus' Command Line Interface ExperienceMete Ozguz
- Broader use of pathway views in cBioPortalYusuf Ziya Özgül
2019
6 acceptedShow
- Addition of novel CPTAC proteogenomic datasets to the cBioPortalLizabeth Katsnelson
- OncoKB Analysis in Study ViewAndrew Cvekl
- Clonal evolution visualization web-toolsWenjie Sun
- ETL pipeline development for TCGA data from GDC PortalZachary Heins
- Spark and Parquet Backend for cBioPortal Web APIDoori Rose
- Integrating PathwayMapper into cBioPortal and Separating the Network View as a standalone moduleZiya ERKOÇ
2017
6 acceptedShow
- Standardizing clinical data from cBioPortal to for easier comparison and analysisbsir
- Improved genome overview in patient view page.Ishu Kalra
- Visualizing circulating tumor DNA results in the cBioPortal patient viewPamela Wu
- Integrating MolecularMatch clinical trials data into cBioPortalsathyabandara
- Implement a Pipeline to Extract and Transform GDC DataDixit Patel
- Collaborative construction of cancer pathways with PathwayMapperLeonard Dervishi
2016
5 acceptedShow
- Onco Query Language (OQL) editorShrumit Mehta
- Build a web service and auto updating pipeline to provide 3D structure alignments for BioPortalJuexinWang
- Integration of Proteomics Data to cBioPortalpambot
- Prototype Plugin framework for AuthenticationAndreeaBican
- Improving the clinical timeline of cBioPortal's patient viewrohangoel96
Public proposals
1Read them for structure, not to copy. All proposals for cBioPortal for Cancer Genomics.
